Bioconductor Without Replicate

Showing : without Replicate • reset

vote

replies

3.2k

views

limma edger timecourse without replicate voom

written 8.2 years ago by Camila Orellana ▴ 10

votes

740

views

bsmooth without replicate dimension

6.5 years ago nilaycan • 0

votes

replies

1.2k

views

deseq2 time-series without replicate

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by bahlv • 0

vote

replies

3.5k

views

deseq2 without replicate no replicates

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by Tony • 0

votes

replies

5.4k

views

diffbind bioconductor differential binding analysis without replicate chipseq

7.2 years ago Hesh ▴ 10

votes

replies

2.7k

views

edger differential gene expression without replicate nested design help

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by knipehf • 0

votes

replies

1.6k

views

edgeR differential expression without replicate

8.6 years ago gavin.oliver • 0

votes

replies

1.6k

views

diffbind without replicate

updated 8.9 years ago by Gord Brown ▴ 670 • written 8.9 years ago by yiweihe • 0

votes

replies

3.1k

views

edger without replicate

updated 9.1 years ago by Yunshun Chen ▴ 900 • written 9.1 years ago by Sushant Pawar • 0

vote

1.6k

views

edger without replicate

updated 9.1 years ago by Aaron Lun ★ 28k • written 9.1 years ago by Sushant Pawar • 0

votes

replies

5.2k

views

without Replicate deseq2

updated 3.5 years ago by Michael Love 43k • written 9.1 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

Recent ...

Replies

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.0k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

Awards • All