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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 7.9 years ago by
Camila Orellana
▴ 10
0
votes
1
reply
699
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
6.2 years ago
nilaycan
• 0
0
votes
3
replies
1.2k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
bahlv
• 0
1
vote
5
replies
3.3k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
Tony
• 0
5
votes
6
replies
5.0k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
6.9 years ago
Hesh
▴ 10
4
votes
5
replies
2.6k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
knipehf
• 0
3
votes
6
replies
1.5k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
8.3 years ago
gavin.oliver
• 0
0
votes
3
replies
1.5k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 8.5 years ago by
Gord Brown
▴ 670 • written 8.5 years ago by
yiweihe
• 0
2
votes
7
replies
3.0k
views
edgeR for with no Replicate
edger
without replicate
updated 8.8 years ago by
Yunshun Chen
▴ 870 • written 8.8 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.5k
views
edgeR for without Replicate
edger
without replicate
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Sushant Pawar
• 0
0
votes
10
replies
5.0k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 3.2 years ago by
Michael Love
42k • written 8.8 years ago by
Sushant Pawar
• 0
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mercedeh.movassagh
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Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
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María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
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Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
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